Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage /

Míreanna Comhchosúla

• Codon usage in mitochondrial genomes : distinguishing context-dependent mutation from translational selection /
  le: Jia, Wenli.
• Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage /
  le: Higgs, Paul G.
• Developmental stage and level of codon usage bias in Drosophila /
• Evolutionary constraint and adaptation in the metabolic network of Drosophila /
  le: Greenberg Anthony J.
• Likelihood-based clustering (LIBAC) for codon models, a method for grouping sites according to similarities in the underlying process of evolution /