Genetic diversity, variation, and structure of two populations of bigfn reef squid (Sepioteuthis lessoniana d’Orbigny) in Con Dao and Phu Quoc islands, Vietnam
Abstract Background Bigfn squid is one of the economically important seafood resources in Vietnam’s fsheries and the waters around Con Dao and Phu Quoc islands are two major fshing grounds where this species has been actively exploited. The start codon targeted polymorphism (SCoT) and CAAT box–de...
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Thư viện Trường Đại học Đà Lạt |
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English |
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Bigfin reef squid SCoT CBDP COI Genetic diversity |
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Bigfin reef squid SCoT CBDP COI Genetic diversity Lê, Ngọc Triệu Nguyễn, Văn Kết Thái, Thạch Bích Nguyễn, Văn Long Genetic diversity, variation, and structure of two populations of bigfn reef squid (Sepioteuthis lessoniana d’Orbigny) in Con Dao and Phu Quoc islands, Vietnam |
| description |
Abstract
Background Bigfn squid is one of the economically important seafood resources in Vietnam’s fsheries
and the waters around Con Dao and Phu Quoc islands are two major fshing grounds where this species has been actively exploited. The start codon targeted polymorphism (SCoT) and CAAT box–derived polymorphism (CBDP) techniques were used to generate DNA fngerprinting data to analyze the genetic diversity, variation, and structure of the two populations in the waters surrounding Phu Quoc and Con Dao islands together with mitochondrial cytochrome C oxidase subunit I (COI) gene sequence data.
Results Con Dao population possessed a higher diversity [expected heterozygosity (He) = 0.2254, Shannon index (I) = 0.3459, percentage of polymorphic bands (PPB) = 80.14%, nucleotide diversity (π) = 0.0336, haplotype diversity (h) = 0.910 with 16 haplotypes] than Phu Quoc population (He = 0.1854, I = 0.2873, PPB = 70.38%, π = 0.0246, h = 0.838 with 14 haplotypes). The genetic diversity at species level in the investigated region was at level of He = 0.2169, I = 0.3399, PPB = 86.41, π = 0.0289, and h = 0.892 with 24 haplotypes. Based on DNA fngerprinting data, the pair wise genetic similarity coefcients among individuals of the Con Dao population were lower (average of 0.7977) than the Phu Quoc population (average of 0.8316). Based on mitochondrial COI data, the pairwise genetic distances among individuals of the Con Dao population were higher (average of 0.0361) than the Phu Quoc population
(average of 0.0263). Gene diferentiation (GST) between two investigated populations was 0.0316 and 0.0310 lead ing to the genetic distance was 0.0573 and 0.0213 and the gene fow between them was Nm = 8.2209 and 11.4700 migrants per generation among populations based on DNA fngerprinting and based on COI gene sequence data, respectively. Genetic variation within individuals of both populations (WP) played the key role in total genetic varia tion at species level in surveyed region.
Conclusions For the bigfn reef squid species in the surveyed region, the Con Dao population had the higher
genetic diversity than the Phu Quoc population, between them existed a low to moderate genetic diferentiation and a genetic exchange via gene fow. The DNA fngerprinting data better revealed the genetic diferentiation
between the two surveyed populations while the mitochondrial COI gene sequence data could show the phylo genetic relationship among the surveyed individuals and the other from the sea regions in Southeast Asia. Based on the results obtained, fsheries management strategies are suggested toward the conservation and sustainable exploitation of this species. |
| format |
Journal article |
| author |
Lê, Ngọc Triệu Nguyễn, Văn Kết Thái, Thạch Bích Nguyễn, Văn Long |
| author_facet |
Lê, Ngọc Triệu Nguyễn, Văn Kết Thái, Thạch Bích Nguyễn, Văn Long |
| author_sort |
Lê, Ngọc Triệu |
| title |
Genetic diversity, variation, and structure of two populations of bigfn reef squid (Sepioteuthis lessoniana d’Orbigny) in Con Dao and Phu Quoc islands, Vietnam |
| title_short |
Genetic diversity, variation, and structure of two populations of bigfn reef squid (Sepioteuthis lessoniana d’Orbigny) in Con Dao and Phu Quoc islands, Vietnam |
| title_full |
Genetic diversity, variation, and structure of two populations of bigfn reef squid (Sepioteuthis lessoniana d’Orbigny) in Con Dao and Phu Quoc islands, Vietnam |
| title_fullStr |
Genetic diversity, variation, and structure of two populations of bigfn reef squid (Sepioteuthis lessoniana d’Orbigny) in Con Dao and Phu Quoc islands, Vietnam |
| title_full_unstemmed |
Genetic diversity, variation, and structure of two populations of bigfn reef squid (Sepioteuthis lessoniana d’Orbigny) in Con Dao and Phu Quoc islands, Vietnam |
| title_sort |
genetic diversity, variation, and structure of two populations of bigfn reef squid (sepioteuthis lessoniana d’orbigny) in con dao and phu quoc islands, vietnam |
| publisher |
Springer |
| publishDate |
2023 |
| url |
https://scholar.dlu.edu.vn/handle/123456789/3244 https://doi.org/10.1186/s43141-023-00573-y |
| _version_ |
1785973331086802944 |
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oai:scholar.dlu.edu.vn:123456789-32442023-12-21T04:01:11Z Genetic diversity, variation, and structure of two populations of bigfn reef squid (Sepioteuthis lessoniana d’Orbigny) in Con Dao and Phu Quoc islands, Vietnam Lê, Ngọc Triệu Nguyễn, Văn Kết Thái, Thạch Bích Nguyễn, Văn Long Bigfin reef squid SCoT CBDP COI Genetic diversity Abstract Background Bigfn squid is one of the economically important seafood resources in Vietnam’s fsheries and the waters around Con Dao and Phu Quoc islands are two major fshing grounds where this species has been actively exploited. The start codon targeted polymorphism (SCoT) and CAAT box–derived polymorphism (CBDP) techniques were used to generate DNA fngerprinting data to analyze the genetic diversity, variation, and structure of the two populations in the waters surrounding Phu Quoc and Con Dao islands together with mitochondrial cytochrome C oxidase subunit I (COI) gene sequence data. Results Con Dao population possessed a higher diversity [expected heterozygosity (He) = 0.2254, Shannon index (I) = 0.3459, percentage of polymorphic bands (PPB) = 80.14%, nucleotide diversity (π) = 0.0336, haplotype diversity (h) = 0.910 with 16 haplotypes] than Phu Quoc population (He = 0.1854, I = 0.2873, PPB = 70.38%, π = 0.0246, h = 0.838 with 14 haplotypes). The genetic diversity at species level in the investigated region was at level of He = 0.2169, I = 0.3399, PPB = 86.41, π = 0.0289, and h = 0.892 with 24 haplotypes. Based on DNA fngerprinting data, the pair wise genetic similarity coefcients among individuals of the Con Dao population were lower (average of 0.7977) than the Phu Quoc population (average of 0.8316). Based on mitochondrial COI data, the pairwise genetic distances among individuals of the Con Dao population were higher (average of 0.0361) than the Phu Quoc population (average of 0.0263). Gene diferentiation (GST) between two investigated populations was 0.0316 and 0.0310 lead ing to the genetic distance was 0.0573 and 0.0213 and the gene fow between them was Nm = 8.2209 and 11.4700 migrants per generation among populations based on DNA fngerprinting and based on COI gene sequence data, respectively. Genetic variation within individuals of both populations (WP) played the key role in total genetic varia tion at species level in surveyed region. Conclusions For the bigfn reef squid species in the surveyed region, the Con Dao population had the higher genetic diversity than the Phu Quoc population, between them existed a low to moderate genetic diferentiation and a genetic exchange via gene fow. The DNA fngerprinting data better revealed the genetic diferentiation between the two surveyed populations while the mitochondrial COI gene sequence data could show the phylo genetic relationship among the surveyed individuals and the other from the sea regions in Southeast Asia. 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